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Entity

Name
proteasomal protein catabolic process
Namespace
go
Namespace Version
20180921
Namespace URL
https://raw.githubusercontent.com/pharmacome/terminology/b46b65c3da259b6e86026514dfececab7c22a11b/external/go-names.belns

Appears in Networks 7

In-Edges 10

p(HGNC:VCP) increases bp(GO:"proteasomal protein catabolic process") View Subject | View Object

For example, yeast Cdc48 (p97 in mammalian cells) is a conserved multisubunit enzyme that plays a major role in dissociating ubiquitinated proteins from their binding partners to promote their degradation by the proteasome [52] PubMed:24457024

path(MESH:"Alzheimer Disease") negativeCorrelation bp(GO:"proteasomal protein catabolic process") View Subject | View Object

The accumulation of proteins in AD patients’ brains generated interest in the role of proteasomal function. There is evidence suggesting that proteasomal activity, but not protein level, is decreased in AD-sensitive brain regions specifically compared to unaffected regions (68, 69). PubMed:24027553

a(MESH:"Heat-Shock Proteins") increases bp(GO:"proteasomal protein catabolic process") View Subject | View Object

Importantly, the Hsps are also critical at the end of a protein’s life, as they facilitate turnover by the proteasome system and the clearance of proteotoxic aggregates by autophagy [53] PubMed:21882945

p(HGNC:HSPB1) increases bp(GO:"proteasomal protein catabolic process") View Subject | View Object

During protein quality control, Hsp70, Hsp90 and Hsp27 (and their co-chaperones) often work in concert. If prolonged misfolding is detected, the chaperones shuttle the protein to a degradation endpoint, such as the proteasome or autophagy PubMed:21882945

p(FPLX:HSP90) increases bp(GO:"proteasomal protein catabolic process") View Subject | View Object

During protein quality control, Hsp70, Hsp90 and Hsp27 (and their co-chaperones) often work in concert. If prolonged misfolding is detected, the chaperones shuttle the protein to a degradation endpoint, such as the proteasome or autophagy PubMed:21882945

p(INTERPRO:"Heat shock protein 70 family") increases bp(GO:"proteasomal protein catabolic process") View Subject | View Object

During protein quality control, Hsp70, Hsp90 and Hsp27 (and their co-chaperones) often work in concert. If prolonged misfolding is detected, the chaperones shuttle the protein to a degradation endpoint, such as the proteasome or autophagy PubMed:21882945

bp(GO:autophagy) negativeCorrelation bp(GO:"proteasomal protein catabolic process") View Subject | View Object

Interdependence of the proteasome and lysosomal system is also suggested by observations that, when proteasome activity is inhibited, proteins accumulate that become substrates for autophagy (Fortun et al. 2003) PubMed:22908190

p(HGNC:SQSTM1) association bp(GO:"proteasomal protein catabolic process") View Subject | View Object

For example, p62, an adaptor protein for autophagy, also influences proteasomal degradation, whereas VCP/p97 acting through p62 and ubiquitin regulates both the proteasome-dependent endoplasmic reticulum–associated degradation (ERAD) pathway and aspects of autophagosome maturation (Tresse et al. 2010). PubMed:22908190

p(HGNC:PRKN) increases bp(GO:"proteasomal protein catabolic process") View Subject | View Object

The E3 ligase Parkin, a protein implicated in Parkinson’s disease, creates an autophagy signal on mitochondria and also tags proteins elsewhere for proteasomal degradation (Yoshii et al. 2011). PubMed:22908190

p(HGNC:ATP13A2, var("?")) increases bp(GO:"proteasomal protein catabolic process") View Subject | View Object

Diseasecausing mutations in ATP13A2 result in protein retention in the endoplasmic reticulum and enhanced proteasomal degradation, suggesting that neurodegeneration could be caused by overwhelming the UPS and/or loss of function in lysosomal protein degradation [39]. PubMed:18930136

Out-Edges 9

bp(GO:"proteasomal protein catabolic process") negativeCorrelation path(MESH:"Alzheimer Disease") View Subject | View Object

The accumulation of proteins in AD patients’ brains generated interest in the role of proteasomal function. There is evidence suggesting that proteasomal activity, but not protein level, is decreased in AD-sensitive brain regions specifically compared to unaffected regions (68, 69). PubMed:24027553

bp(GO:"proteasomal protein catabolic process") increases deg(p(HGNC:MAPT)) View Subject | View Object

It has been indicated that intracellular tau proteins are also degraded by autophagy and proteasomal pathways (Wang and Mandelkow 2012) PubMed:29626319

bp(GO:"proteasomal protein catabolic process") negativeCorrelation bp(GO:autophagy) View Subject | View Object

Interdependence of the proteasome and lysosomal system is also suggested by observations that, when proteasome activity is inhibited, proteins accumulate that become substrates for autophagy (Fortun et al. 2003) PubMed:22908190

bp(GO:"proteasomal protein catabolic process") decreases a(MESH:Proteins) View Subject | View Object

Interdependence of the proteasome and lysosomal system is also suggested by observations that, when proteasome activity is inhibited, proteins accumulate that become substrates for autophagy (Fortun et al. 2003) PubMed:22908190

bp(GO:"proteasomal protein catabolic process") association p(HGNC:SQSTM1) View Subject | View Object

For example, p62, an adaptor protein for autophagy, also influences proteasomal degradation, whereas VCP/p97 acting through p62 and ubiquitin regulates both the proteasome-dependent endoplasmic reticulum–associated degradation (ERAD) pathway and aspects of autophagosome maturation (Tresse et al. 2010). PubMed:22908190

bp(GO:"proteasomal protein catabolic process") increases deg(p(HGNC:MAPT)) View Subject | View Object

Tau phosphorylated at Ser262 or Ser356 cannot be recognized by the C terminus of HSP70‑interacting protein–heat shock protein 90 (CHIP–HSP90) complex and is thus spared from proteasomal degradation PubMed:26631930

bp(GO:"proteasomal protein catabolic process") decreases deg(p(HGNC:MAPT, pmod(Ph, Ser, 262), pmod(Ph, Ser, 356))) View Subject | View Object

Tau phosphorylated at Ser262 or Ser356 cannot be recognized by the C terminus of HSP70‑interacting protein–heat shock protein 90 (CHIP–HSP90) complex and is thus spared from proteasomal degradation PubMed:26631930

bp(GO:"proteasomal protein catabolic process") increases deg(p(HGNC:MAPT, pmod(Ub))) View Subject | View Object

Tau is known to be ubiquitylated through Lys48 linkages by CHIP for proteasomal degradation PubMed:26631930

bp(GO:"proteasomal protein catabolic process") increases deg(p(HGNC:MAPT, pmod(UbK63))) View Subject | View Object

Notably, one study demonstrated that tau can also be ubiquitylated through Lys63 linkages by TNF receptor-associated factor 6 (TRAF6) — again, for proteasomal degradation PubMed:26631930

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If you find BEL Commons useful in your work, please consider citing: Hoyt, C. T., Domingo-Fernández, D., & Hofmann-Apitius, M. (2018). BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language. Database, 2018(3), 1–11.