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a(HM:"nitrite oxidation")

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Entity

Name
nitrite oxidation
Namespace
HM
Namespace Version
None
Pattern
.*

Appears in Networks 1

Heme Curation v0.0.1-dev

Mechanistic knowledge surrounding heme

In-Edges 5

a(CHEBI:heme) positiveCorrelation a(HM:"nitrite oxidation") View Subject | View Object

Figures 5A-5B, show that at d7, faster rates for nitrite oxidation in the lag phase were positively associated with higher concentrations of extracellular free heme at d7 and d35. PubMed:26202471

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a(CHEBI:oxyhemoglobin) positiveCorrelation a(HM:"nitrite oxidation") View Subject | View Object

Figures 5C-5D show that d7 propagation rates for nitrite oxidation correlate with both d7 and d35 cell-free oxyhemoglobin. PubMed:26202471

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bp(MESH:"Oxidative Stress") positiveCorrelation a(HM:"nitrite oxidation") View Subject | View Object

In other words, the faster rate of d7 nitrite oxidation predicted greater extents of oxidative damage incurred by the RBCs during storage. PubMed:26202471

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p(MGI:Prdx2) positiveCorrelation a(HM:"nitrite oxidation") View Subject | View Object

Figures 4B-D shows that d7 Prx-2 oxidation correlates positively with nitrite oxidation kinetics in the lag phase (i.e. inversely with lag time, positively with lag rates, Figures 4B-C respectively). PubMed:26202471

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p(MGI:Prdx2) positiveCorrelation a(HM:"nitrite oxidation") View Subject | View Object

Figure 5E shows that d7 nitrite oxidation propagation rates also positively correlate with the extent of Prx-2 oxidation that occurred during storage (i.e. d35 – d7 Prx-2 oxidation in RBC). PubMed:26202471

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Out-Edges 5

a(HM:"nitrite oxidation") positiveCorrelation p(MGI:Prdx2) View Subject | View Object

Figures 4B-D shows that d7 Prx-2 oxidation correlates positively with nitrite oxidation kinetics in the lag phase (i.e. inversely with lag time, positively with lag rates, Figures 4B-C respectively). PubMed:26202471

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Results

a(HM:"nitrite oxidation") positiveCorrelation p(MGI:Prdx2) View Subject | View Object

Figure 5E shows that d7 nitrite oxidation propagation rates also positively correlate with the extent of Prx-2 oxidation that occurred during storage (i.e. d35 – d7 Prx-2 oxidation in RBC). PubMed:26202471

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Text Location
Results

a(HM:"nitrite oxidation") positiveCorrelation a(CHEBI:heme) View Subject | View Object

Figures 5A-5B, show that at d7, faster rates for nitrite oxidation in the lag phase were positively associated with higher concentrations of extracellular free heme at d7 and d35. PubMed:26202471

Appears in Networks:
Annotations
Text Location
Results

a(HM:"nitrite oxidation") positiveCorrelation a(CHEBI:oxyhemoglobin) View Subject | View Object

Figures 5C-5D show that d7 propagation rates for nitrite oxidation correlate with both d7 and d35 cell-free oxyhemoglobin. PubMed:26202471

Appears in Networks:
Annotations
Text Location
Results

a(HM:"nitrite oxidation") positiveCorrelation bp(MESH:"Oxidative Stress") View Subject | View Object

In other words, the faster rate of d7 nitrite oxidation predicted greater extents of oxidative damage incurred by the RBCs during storage. PubMed:26202471

Appears in Networks:
Annotations
Text Location
Discussion

About

BEL Commons is developed and maintained in an academic capacity by Charles Tapley Hoyt and Daniel Domingo-Fernández at the Fraunhofer SCAI Department of Bioinformatics with support from the IMI project, AETIONOMY. It is built on top of PyBEL, an open source project. Please feel free to contact us here to give us feedback or report any issues. Also, see our Publishing Notes and Data Protection information.

If you find BEL Commons useful in your work, please consider citing: Hoyt, C. T., Domingo-Fernández, D., & Hofmann-Apitius, M. (2018). BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language. Database, 2018(3), 1–11.