Provenance

Upload
charles.hoyt@scai.fraunhofer.de at 2019-02-27 16:16:42.834397
Authors
Rana Aldisi
Contact
charles.hoyt@scai.fraunhofer.de
License
CC BY 4.0
Copyright
Copyright © 2018 Fraunhofer Institute SCAI, All rights reserved.
Number Nodes
40
Number Edges
87
Number Components
2
Network Density
0.0557692307692308
Average Degree
2.175
Number Citations
1
Number BEL Errors
0

Content Statistics

Network Overlap

The node-based overlap between this network and other networks is calculated as the Szymkiewicz-Simpson coefficient of their respective nodes. Up to the top 10 are shown below.

Network Overlap
albuquerque2009 v1.0.0 15%
Neuronal Nicotinic Acetylcholine Receptor Structure and Function and Response to Nicotine v1.0.1 12%
Neural Systems Governed by Nicotinic Acetylcholine Receptors: Emerging Hypotheses v1.0.0 10%
Alzheimer's Disease: Targeting the Cholinergic System v1.0.0 10%
Structural and functional properties of prefibrillar α-synuclein oligomers v1.0.0 8%
Nicotinic receptors: allosteric transitions and therapeutic targets in the nervous system v1.0.0 8%
Nicotinic acetylcholine receptor signalling: roles in Alzheimer's disease and amyloid neuroprotection. v1.0.0 8%
Nicotinic Acetylcholine Receptors and Nicotinic Cholinergic Mechanisms of the Central Nervous System v1.0.0 8%
Role of the nicotinic acetylcholine receptor in Alzheimer's disease pathology and treatment v1.0.1 5%
Chaperoning α7 neuronal nicotinic acetylcholine receptors v1.0.0 5%

Sample Edges

a(CHEBI:"calcium(2+)") association act(a(MESH:"Calcium Channels")) View Subject | View Object

In α7345–348A nAChR expressing cells, nifedipine had no effect on the peak or the duration of the calcium transient (peak: 957.00% ΔF/Fθ ± 252.2%; AUC: 333.33% ΔF/Fθ2 × s ± 91.53%) relative to choline treatment alone (Fig. 5, A–C). The findings suggest that choline-induced calcium responses in PC12 cells involve the activity of VGCC (37, 38). PubMed:26088141

act(a(CHEBI:choline)) increases a(CHEBI:"calcium(2+)") View Subject | View Object

PC12 cells transfected with α7345–348A showed a reduction in choline-mediated calcium responses. PubMed:26088141

Annotations
MeSH
PC12 Cells

act(a(CHEBI:choline)) association act(a(MESH:"Calcium Channels")) View Subject | View Object

In α7345–348A nAChR expressing cells, nifedipine had no effect on the peak or the duration of the calcium transient (peak: 957.00% ΔF/Fθ ± 252.2%; AUC: 333.33% ΔF/Fθ2 × s ± 91.53%) relative to choline treatment alone (Fig. 5, A–C). The findings suggest that choline-induced calcium responses in PC12 cells involve the activity of VGCC (37, 38). PubMed:26088141

a(CHEBI:choline) association bp(MESH:"Pleckstrin Homology Domains") View Subject | View Object

Treatment of PC12 cells with 10 mM choline was associated with a translocation of PH-mCherry from the cell surface as determined by the presence of the fluorescence signal within 1 μm of the edge of the cell into the cytosol of the GC (Fig. 6, A and B). Pre-treatment of cells with SP abolished this translocation (Fig. 6B). PubMed:26088141

Annotations
MeSH
Cytosol
MeSH
PC12 Cells

a(CHEBI:choline) increases bp(MESH:"Pleckstrin Homology Domains") View Subject | View Object

Sequential imaging of PH-mCherry and GCaMP5G confirms that choline promotes a rise in intracellular calcium and PH-mCherry translocation in the same cellular compartment (Fig. 6, B and C). Cytoplasmic translocation of PH-mCherry occurred on a slower time scale (40 s after choline application) than peak calcium responses (∼1 s after choline application). These kinetics are consistent with the translocation of the PH domain sensor in the cell (20, 29). PubMed:26088141

Annotations
MeSH
Cytosol

Sample Nodes

a(CHEBI:"calcium(2+)")

In-Edges: 56 | Out-Edges: 30 | Explore Neighborhood | Download JSON

a(CHEBI:choline)

In-Edges: 19 | Out-Edges: 13 | Explore Neighborhood | Download JSON

p(HGNC:CHRNA7)

In-Edges: 135 | Out-Edges: 111 | Explore Neighborhood | Download JSON

About

BEL Commons is developed and maintained in an academic capacity by Charles Tapley Hoyt and Daniel Domingo-Fernández at the Fraunhofer SCAI Department of Bioinformatics with support from the IMI project, AETIONOMY. It is built on top of PyBEL, an open source project. Please feel free to contact us here to give us feedback or report any issues. Also, see our Publishing Notes and Data Protection information.

If you find BEL Commons useful in your work, please consider citing: Hoyt, C. T., Domingo-Fernández, D., & Hofmann-Apitius, M. (2018). BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language. Database, 2018(3), 1–11.