| Naked Name |
Raised when a namespace:name argument is used without a namespace. For example,
a("Amyloid beta") should be qualified with the namespace CHEBI as in
a(CHEBI:"Amyloid beta").
|
| Undefined Namespace |
Raised when a namespace:name argument uses a namespace that was not defined. |
| Missing Namespace Name |
Raised when a namespace is defined, and the name in a namespace:name argument
is not contained.
|
| Missing Namespace Regex |
Raised when a namespace is defined by a regular expression, and a namespace:name
argument
does not match.
|
| Undefined Annotation |
Raised when a SET {annotation} = "{value}" statement uses an annotation that was
not defined.
|
| Missing Annotation Key |
Raised when trying to UNSET and annotation that has not been SET.
|
| Illegal Annotation Value |
Raised when an annotation is defined, and the value in a SET {annotation} =
"{value}"
statement is not contained.
|
| Missing Annotation Regex |
Raised when an is defined by a regular expression, and a SET {annotation} =
"{value}" value does not match.
|
| Citation Too Short |
Raised when setting a citation, but does not have the minimum fields of SET Citation =
{type, reference}.
|
| Citation Too Long |
Raised when setting a citation, but it has too many fields (more than {type, name, reference,
date, authors, comments}.)
|
| Invalid Citation Type |
Raised when setting a citation uses an invalid type. Valid types are:
- Book
- PubMed
- Journal
- Online Resource
- URL
- DOI
- Other
|
| Invalid PubMed Identifier |
Raised when setting a citation with the PubMed type, but the reference is not a valid integer.
|
| Missing Citation |
Raised when a BEL statement is encountered, but the citation has not been set. All BEL needs
provenance!
|
| Missing Support |
Raised when a BEL statement is encountered, but the evidence/support has not been set. All BEL
needs provenance!
|
| Invalid Function Semantic |
Raised when a namespace:name is used in a BEL term (protein, biological process,
etc.) for which it is not valid. For example, a non-coding gene can not be used in a protein
tag.
Note: the semantics for each namespace:name are defined in the BEL
namespace files.
|
