This section lists all of the namespaces that are defined in the original BEL script.
The source BEL script contained references to the following namespaces, but they were never used. It is suggested to delete their definitions from the BEL script to improve readability and parsing speed.
This section lists all of the annotations that are defined in the original BEL script.
The source BEL script contained references to the following annotations, but they were never used. It is suggested to delete their definitions from the BEL script to improve readability and parsing speed.
Note: this may be due to errors occurring in all statements with these annotations.
The source BEL script contained annotations defined as a list. Click each link to export
the list definition as a BELANNO
file that can hosted externally to promote
reusability and interoperability. After, you can replace the list definition in the source
BEL with a SET ANNOTATION X AS URL "Y"
definition.
The source BEL script contained the following list annotations, but no references to the following values. It is suggested to prune these values from the list definitions.
Note: this may be due to errors occurring in all statements with these annotations.
Annotation  Values 

Assay 

CellLine 

Dosage 

MouseStrain 

TextLocation 

A faceted table view of all parser warnings can be viewed and exported from here.
Line  BEL  Message 

60  SET SpeciesNames = "Mus musculus" 
"SpeciesNames" is not defined 
64  SET Confidence = "very high" 
"Confidence" is not defined 
68  UNSET Confidence 
"Confidence" is not defined 
71  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
77  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
79  SET Confidence = "very high" 
"Confidence" is not defined 
83  UNSET Confidence 
"Confidence" is not defined 
92  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i2)) 
"CHEMBLID" is not a defined namespace 
98  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
100  SET Confidence = "very high" 
"Confidence" is not defined 
104  UNSET Confidence 
"Confidence" is not defined 
113  UNSET Confidence 
"Confidence" is not defined 
116  SET Confidence = "very high" 
"Confidence" is not defined 
118  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
121  UNSET Confidence 
"Confidence" is not defined 
126  SET Confidence = "very high" 
"Confidence" is not defined 
130  UNSET Confidence 
"Confidence" is not defined 
137  SET Confidence = "very high" 
"Confidence" is not defined 
138  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
140  UNSET Confidence 
"Confidence" is not defined 
150  SET SpeciesNames = "Homo sapiens" 
"SpeciesNames" is not defined 
151  SET Cell = "hepatocyte" 
"Cell" is not defined 
157  SET Confidence = "very high" 
"Confidence" is not defined 
164  UNSET Confidence 
"Confidence" is not defined 
173  SET MeSHDisease = "no disease" 
"MeSHDisease" is not defined 
202  SET Confidence = "very high" 
"Confidence" is not defined 
208  UNSET Confidence 
"Confidence" is not defined 
214  SET Confidence = "very high" 
"Confidence" is not defined 
219  UNSET Confidence 
"Confidence" is not defined 
226  SET Confidence = "very high" 
"Confidence" is not defined 
232  UNSET Confidence 
"Confidence" is not defined 
234  UNSET STATEMENT_GROUP 
"STATEMENT_GROUP" is not set, so it can't be unset 
235  SET SpeciesNames = "Mus musculus" 
"SpeciesNames" is not defined 
239  SET Confidence = "very high" 
"Confidence" is not defined 
243  UNSET Confidence 
"Confidence" is not defined 
246  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
252  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
254  SET Confidence = "very high" 
"Confidence" is not defined 
258  UNSET Confidence 
"Confidence" is not defined 
267  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i2)) 
"CHEMBLID" is not a defined namespace 
273  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
275  SET Confidence = "very high" 
"Confidence" is not defined 
279  UNSET Confidence 
"Confidence" is not defined 
288  UNSET Confidence 
"Confidence" is not defined 
291  SET Confidence = "very high" 
"Confidence" is not defined 
293  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
296  UNSET Confidence 
"Confidence" is not defined 
301  SET Confidence = "very high" 
"Confidence" is not defined 
305  UNSET Confidence 
"Confidence" is not defined 
312  SET Confidence = "very high" 
"Confidence" is not defined 
313  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
315  UNSET Confidence 
"Confidence" is not defined 
325  SET SpeciesNames = "Homo sapiens" 
"SpeciesNames" is not defined 
326  SET Cell = "hepatocyte" 
"Cell" is not defined 
332  SET Confidence = "very high" 
"Confidence" is not defined 
339  UNSET Confidence 
"Confidence" is not defined 
348  SET MeSHDisease = "no disease" 
"MeSHDisease" is not defined 
377  SET Confidence = "very high" 
"Confidence" is not defined 
383  UNSET Confidence 
"Confidence" is not defined 
389  SET Confidence = "very high" 
"Confidence" is not defined 
394  UNSET Confidence 
"Confidence" is not defined 
401  SET Confidence = "very high" 
"Confidence" is not defined 
407  UNSET Confidence 
"Confidence" is not defined 
409  UNSET STATEMENT_GROUP 
"STATEMENT_GROUP" is not set, so it can't be unset 
413  SET Cell = "hepatocyte" 
"Cell" is not defined 
414  SET MeSHDisease = "no disease" 
"MeSHDisease" is not defined 
417  SET SpeciesNames = "Mus musculus" 
"SpeciesNames" is not defined 
427  SET Confidence = "very high" 
"Confidence" is not defined 
431  UNSET Confidence 
"Confidence" is not defined 
437  SET Confidence = "very high" 
"Confidence" is not defined 
439  UNSET Confidence 
"Confidence" is not defined 
445  SET Confidence = "very high" 
"Confidence" is not defined 
448  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
450  UNSET Confidence 
"Confidence" is not defined 
453  a(PMICHEM:Androstanol) =act(p(MGI:Nr1i3)) 
"PMICHEM" is not a defined namespace 
455  SET Confidence = "very high" 
"Confidence" is not defined 
457  a(CHEMBLID:CHEMBL488803) => act(p(MGI:Nr1i3)) 
"CHEMBLID" is not a defined namespace 
460  UNSET Confidence 
"Confidence" is not defined 
Error  Frequency 

"Confidence" is not defined 
50 
"CHEMBLID" is not a defined namespace 
14 
"SpeciesNames" is not defined 
5 
"Cell" is not defined 
3 
"MeSHDisease" is not defined 
3 
"STATEMENT_GROUP" is not set, so it can't be unset 
2 
BEL Commons is developed and maintained in an academic capacity by Charles Tapley Hoyt and Daniel DomingoFernández at the Fraunhofer SCAI Department of Bioinformatics with support from the IMI project, AETIONOMY. It is built on top of the open source project, PyBEL. Please feel free to contact us here to give us feedback or report any issues.