Table of Contents

Namespaces

This section lists all of the namespaces that are defined in the original BEL script.

Annotations

This section lists all of the annotations that are defined in the original BEL script.

Keyword URL Stratify

Unused Annotations 1

The source BEL script contained references to the following annotations, but they were never used. It is suggested to delete their definitions from the BEL script to improve readability and parsing speed.

Note: this may be due to errors occurring in all statements with these annotations.

  • Confidence

Locally Defined Annotations 1

The source BEL script contained annotations defined as a list. Click each link to export the list definition as a BELANNO file that can hosted externally to promote re-usability and interoperability. After, you can replace the list definition in the source BEL with a SET ANNOTATION X AS URL "Y" definition.

Unused Locally Defined Annotations 1

The source BEL script contained the following list annotations, but no references to the following values. It is suggested to prune these values from the list definitions.

Note: this may be due to errors occurring in all statements with these annotations.

Annotation Values
Confidence
  • high
  • medium
  • low
  • very high
  • very low

Warning Statistics

All Parser Warnings 13

A faceted table view of all parser warnings can be viewed and exported from here.

Line BEL Message
0 Missing required document metadata: Authors
6 SET DOCUMENT Version = "1.0" Version string "1.0" neither is a date like YYYYMMDD nor adheres to semantic versioning. See http://semver.org/
19 SET MeSHDisease = "Liver Failure, Acute" Missing citation; can't add: SET MeSHDisease = "Liver Failure, Acute"
22 SET Species = "10116" "Species" is not defined
23 SET Anatomy = "liver" "Anatomy" is not defined
25 path(MESHD:"Liver Failure, Acute") decreases a(CHEBI:glucose) "MESHD" is not a defined namespace
29 path(MESHD:"Liver Failure, Acute") increases a(CHEBI:lactate) "MESHD" is not a defined namespace
30 path(MESHD:"Liver Failure, Acute") decreases a(CHEBI:urea) "MESHD" is not a defined namespace
31 path(MESHD:"Liver Failure, Acute") decreases bp(GOBP:"ketone body biosynthetic process") "MESHD" is not a defined namespace
32 path(MESHD:"Liver Failure, Acute") decreases bp(MESHPP:"Oxygen Consumption") "MESHD" is not a defined namespace
37 path(MESHD:"Liver Failure, Acute") decreases bp(MESHPP:"Citric Acid Cycle") "MESHD" is not a defined namespace
38 path(MESHD:"Liver Failure, Acute") decreases bp(GOBP:gluconeogenesis) "MESHD" is not a defined namespace
42 path(MESHD:"Liver Failure, Acute") decreases bp(GOBP:"ketone body biosynthetic process") "MESHD" is not a defined namespace

Top Warnings

Error Frequency
"MESHD" is not a defined namespace 8

Undefined Namespaces 1

The source BEL script contained references to the following namespaces, but they were never defined. Click the links to download them as enumerated namespaces, and update the BEL script accordingly.

About

BEL Commons is developed and maintained in an academic capacity by Charles Tapley Hoyt and Daniel Domingo-Fernández at the Fraunhofer SCAI Department of Bioinformatics with support from the IMI project, AETIONOMY. It is built on top of the open source project, PyBEL. Please feel free to contact us here to give us feedback or report any issues.