Versions 6

Table of Contents

Namespaces

Unused Namespaces 2

The source BEL script contained references to the following namespaces, but they were never used. It is suggested to delete their definitions from the BEL script to improve readability and parsing speed.

  • GOBP
  • MESHPP

Annotations

This section lists all of the annotations that are defined in the original BEL script.

Keyword URL Stratify
CellLine https://arty.scai.fraunhofer.de/artifactory/bel/annotation/cell-line/cell-line-20170511.belanno View Stratified Summary
MESHD https://arty.scai.fraunhofer.de/artifactory/bel/annotation/mesh-diseases/mesh-diseases-20170725.belanno View Stratified Summary
MeSHAnatomy https://arty.scai.fraunhofer.de/artifactory/bel/annotation/mesh-anatomy/mesh-anatomy-20170511.belanno View Stratified Summary
Species https://arty.scai.fraunhofer.de/artifactory/bel/annotation/species-taxonomy-id/species-taxonomy-id-20170511.belanno View Stratified Summary

Unused Annotations 5

The source BEL script contained references to the following annotations, but they were never used. It is suggested to delete their definitions from the BEL script to improve readability and parsing speed.

Note: this may be due to errors occurring in all statements with these annotations.

  • Assay
  • CellLine
  • Dosage
  • MESHD
  • Species

Locally Defined Annotations 3

The source BEL script contained annotations defined as a list. Click each link to export the list definition as a BELANNO file that can hosted externally to promote re-usability and interoperability. After, you can replace the list definition in the source BEL with a SET ANNOTATION X AS URL "Y" definition.

Unused Locally Defined Annotations 3

The source BEL script contained the following list annotations, but no references to the following values. It is suggested to prune these values from the list definitions.

Note: this may be due to errors occurring in all statements with these annotations.

Annotation Values
Assay
  • Cytotoxicity assay
  • orthogonal sedimentation assay
  • thioflavine-T (ThT) binding and fluorescence assay
  • MT-polymerization assay
Dosage
  • 2-32microM
  • 100microM
  • 5mg/kg
TextLocation
  • Discussion
  • Conclusion
  • Pharmacokinetic Studies

Warning Statistics

All Parser Warnings 51

A faceted table view of all parser warnings can be viewed and exported from here.

Line BEL Message
42 SET Species = "Mus musculus" "Mus musculus" is not defined in the Species annotation
43 SET MeSHDisease="Alzheimer Disease" "MeSHDisease" is not defined
45 p(MGI:Mapt)--path(MeSHDisease:Taupathies) "Taupathies" is not in the MeSHDisease namespace
54 SET Species = "Mus musculus" "Mus musculus" is not defined in the Species annotation
55 SET MeSHDisease ="Alzheimer Disease" "MeSHDisease" is not defined
57 a(FIXME:aminothienopyridazine) -| bp(GOBP:"neurofibrillary tangle assembly") "FIXME" is not a defined namespace
58 a(FIXME:aminothienopyridazine)--path(MeSHDisease:Tauopathies) "FIXME" is not a defined namespace
63 SET Species = "Mus musculus" "Mus musculus" is not defined in the Species annotation
64 SET MeSHDisease="Alzheimer Disease" "MeSHDisease" is not defined
65 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-isopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")->bp(MESHPP:Pharmacokinetics) "FIXME" is not a defined namespace
66 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-cyclopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide") ->bp(MESHPP:Pharmacokinetics) "FIXME" is not a defined namespace
71 SET Species = "Mus musculus" "Mus musculus" is not defined in the Species annotation
72 SET MeSHDisease ="Alzheimer Disease" "MeSHDisease" is not defined
73 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-isopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")--path(MeSHDisease:Tauopathies) "FIXME" is not a defined namespace
74 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-cyclopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")--path(MeSHDisease:Tauopathies) "FIXME" is not a defined namespace
81 SET MeSHDisease="Alzheimer Disease" "MeSHDisease" is not defined
83 SET Dosage = "2-32 microM" "2-32 microM" is not defined in the Dosage annotation
85 a(FIXME:aminothienopyridazine)-| bp(GOBP:"neurofibrillary tangle assembly") "FIXME" is not a defined namespace
92 SET MeSHDisease= "Alzheimer Disease" "MeSHDisease" is not defined
95 a(FIXME:aminothienopyridazine) -| act(bp(GOBP:"neurofibrillary tangle assembly")) "FIXME" is not a defined namespace
102 SET MeSHDisease ="Alzheimer Disease" "MeSHDisease" is not defined
105 a(FIXME:aminothienopyridazine) -| bp(GOBP:"neurofibrillary tangle assembly") "FIXME" is not a defined namespace
111 SET MeSHDisease ="Alzheimer Disease" "MeSHDisease" is not defined
115 a(FIXME:aminothienopyridazine)causesNoChange bp(MESHPP:"Cytotoxicity, Immunologic") "FIXME" is not a defined namespace
123 SET Species = "Mus musculus" "Mus musculus" is not defined in the Species annotation
124 SET MeSHDisease ="Alzheimer Disease" "MeSHDisease" is not defined
127 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-ethyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")->bp(MESHPP:Pharmacokinetics) "FIXME" is not a defined namespace
128 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-isopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")->bp(MESHPP:Pharmacokinetics) "FIXME" is not a defined namespace
129 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-cyclopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide") ->bp(MESHPP:Pharmacokinetics) "FIXME" is not a defined namespace
134 SET Species = "Mus musculus" "Mus musculus" is not defined in the Species annotation
135 SET MeSHDisease ="Alzheimer Disease" "MeSHDisease" is not defined
137 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-cyclopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide") ->bp(MESHPP:Pharmacokinetics) "FIXME" is not a defined namespace
142 SET Species = "Mus musculus" "Mus musculus" is not defined in the Species annotation
143 SET MeSHDisease = "Alzheimer Disease" "MeSHDisease" is not defined
144 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-cyclopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")-> bp(MESHPP:"Biological Availability") "FIXME" is not a defined namespace
151 SET MeSHDisease ="Alzheimer Disease" "MeSHDisease" is not defined
153 a(FIXME:aminothienopyridazine)-|bp(GOBP:"neurofibrillary tangle assembly") "FIXME" is not a defined namespace
159 SET MeSHDisease ="Alzheimer Disease" "MeSHDisease" is not defined
160 SET Species = "Mus musculus" "Mus musculus" is not defined in the Species annotation
162 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-ethyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")--bp(GOBP:"negative regulation of maintenance of permeability of blood-brain barrier") "FIXME" is not a defined namespace
163 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-isopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")--bp(GOBP:"negative regulation of maintenance of permeability of blood-brain barrier") "FIXME" is not a defined namespace
164 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-cyclopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")--bp(GOBP:"negative regulation of maintenance of permeability of blood-brain barrier") "FIXME" is not a defined namespace
169 SET MeSHDisease ="Alzheimer Disease" "MeSHDisease" is not defined
170 SET Species = "Mus musculus" "Mus musculus" is not defined in the Species annotation
172 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-isopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")-> bp(MESHPP:"Biological Availability") "FIXME" is not a defined namespace
173 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-cyclopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")-> bp(MESHPP:"Biological Availability") "FIXME" is not a defined namespace
180 SET MeSHDisease ="Alzheimer Disease" "MeSHDisease" is not defined
182 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-isopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")->bp(MESHPP:"Biological Availability") "FIXME" is not a defined namespace
183 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-cyclopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")->bp(MESHPP:"Biological Availability") "FIXME" is not a defined namespace
184 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-isopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")--bp(GOBP:"negative regulation of maintenance of permeability of blood-brain barrier") "FIXME" is not a defined namespace
185 a(FIXME:"5-Amino-3-(4-chlorophenyl)-N-cyclopropyl-4-oxo-3,4-dihydrothieno[3,4-d]pyridazine-1-carboxamide")--bp(GOBP:"negative regulation of maintenance of permeability of blood-brain barrier") "FIXME" is not a defined namespace

Top Warnings

Error Frequency
"FIXME" is not a defined namespace 25
"MeSHDisease" is not defined 15
"Mus musculus" is not defined in the Species annotation 9

Undefined Namespaces 1

The source BEL script contained references to the following namespaces, but they were never defined. Click the links to download them as enumerated namespaces, and update the BEL script accordingly.

Namespaces with Incorrect Names 1

About

BEL Commons is developed and maintained in an academic capacity by Charles Tapley Hoyt and Daniel Domingo-Fernández at the Fraunhofer SCAI Department of Bioinformatics with support from the IMI project, AETIONOMY. It is built on top of the open source project, PyBEL. Please feel free to contact us here to give us feedback or report any issues.