Omic Catalog

Currently, each entry in the Omic Catalog corresponds to the results from a differential gene expression analysis. Instructions for creating new data sets from the GEO can be found here.

The three pre-processed differential gene expression experiments related to Alzheimer's disease corresponding to the examples in the BEL Commons manuscript are available on GitHub.

Identifier Created Description Public Experiments
18 2018-04-03 17:02:51 Patients from GSE1297 with severe Alzheimer's disease 2
16 2018-04-03 17:02:50 Patients from GSE1297 with incipient Alzheimer's disease 2
17 2018-04-03 17:02:50 Patients from GSE1297 with moderate Alzheimer's disease 2
15 2018-04-03 17:02:49 Patients from GSE28146 with severe Alzheimer's disease 2
13 2018-04-03 17:02:48 Patients from GSE28146 with incipient Alzheimer's disease 2
14 2018-04-03 17:02:48 Patients from GSE28146 with moderate Alzheimer's disease 2
12 2018-04-03 16:27:06 Moderate AD 1
11 2018-04-03 16:26:53 Severe AD 1
1 2018-04-03 14:44:46 Patients from GSE28146 with incipient Alzheimer's disease 3
2 2018-04-03 14:44:46 Patients from GSE28146 with moderate Alzheimer's disease 3
3 2018-04-03 14:44:46 Patients from GSE28146 with severe Alzheimer's disease 3
4 2018-04-03 14:44:46 Patients from GSE1297 with incipient Alzheimer's disease 3
5 2018-04-03 14:44:46 Patients from GSE1297 with moderate Alzheimer's disease 3
6 2018-04-03 14:44:46 Patients from GSE1297 with severe Alzheimer's disease 3
7 2018-04-03 14:44:46 Patients from GSE63063 with mild cognitive impairment (batch 1/GPL10558) 3
8 2018-04-03 14:44:46 Patients from GSE63063 with Alzheimer's disease (batch 1/GPL10558) 3
9 2018-04-03 14:44:46 Patients from GSE63063 with mild cognitive impairment (batch 2/GPL10558) 3
10 2018-04-03 14:44:46 Patients from GSE63063 with Alzheimer's disease (batch 2/GPL10558) 3

About

BEL Commons is developed and maintained in an academic capacity by Charles Tapley Hoyt and Daniel Domingo-Fernández at the Fraunhofer SCAI Department of Bioinformatics with support from the IMI project, AETIONOMY. It is built on top of the open source project, PyBEL. Please feel free to contact us here to give us feedback or report any issues.